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Species belonging to selected taxon:
Catharanthus roseus
ABOUT THIS RECORD
ID:
MNEST046378
species:
Catharanthus roseus
source:
microPC, original name:
miR169
Taxonomy by NCBI:
Catharanthus roseus
Catharanthus
Vinceae
Rauvolfioideae
Apocynaceae
Gentianales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCG
miRNA*
GCAAGTTGTCTTTGGCT
mismatches:
3
bulges:
0
View larger
pre-miRNA
CAGCCAAGGATGACTTGCCG
ACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATATTTGCCGCCGTACGTATTTATAC
GAACTCCTCG
GCAAGTTGTCTTTGGCT
dot-bracket secondary structure
.(((((((((..((((((((
(..............(((((((((...(((((..................)))))))))).)))).((.((((....)))
).))...)))
))))))..)))))))))
SIMILARITIES
miRBase
vvi-MIR169g
:
0.000006
PMRD
vvi-miR169g
:
0.000006
microPC
miR169
:
1e-37
UniProt
no hits
RFAM
MIR169_2: 0.00003
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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